RnoEX6011469 @ rn6
Exon Skipping
Gene
ENSRNOG00000011076 | Ank2
Description
ankyrin 2 [Source:RGD Symbol;Acc:620156]
Coordinates
chr2:231268190-231280430:-
Coord C1 exon
chr2:231280327-231280430
Coord A exon
chr2:231269728-231269952
Coord C2 exon
chr2:231268190-231268288
Length
225 bp
Sequences
Splice sites
3' ss Seq
TATTCCATTTCGGTTTTCAGTTT
3' ss Score
7.76
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGTCAGCCCTAGCCAAGGAGGCAGAAAGGAATTCTTATCGTCTGAGCTGGGGCACCGAGAACTTAGACAACGTGGCTCTTTCTTCCAGTCCTATTCATTCAGG
Seq A exon
TTTCCTAGTCAGTTTTATGGTGGATGCCCGTGGTGGTGCCATGCGAGGGTGCAGACACAATGGGCTCAGAATCATTATCCCACCTCGGAAATGCACAGCCCCGACTCGAGTCACCTGCCGCCTTGTGAAACGCCACAGACTGGCGACGATGCCACCCATGGTGGAAGGAGAAGGCCTGGCCAGCCGCCTGATTGAAGTCGGACCTTCCGGAGCTCAGTTCCTTGG
Seq C2 exon
TAAACTTCACCTGCCAACGGCTCCTCCCCCACTTAATGAGGGAGAAAGTTTGGTCAGCCGCATCCTTCAGCTGGGGCCTCCTGGAACCAAATTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011076-'69-58,'69-57,72-58=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.017 C2=0.171
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(1.0=2.9)
A:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
C2:
PF0079115=ZU5=PD(8.3=20.6),PF0079115=ZU5=PU(53.2=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAGCCCTAGCCAAGG
R:
GAATTTGGTTCCAGGAGGCCC
Band lengths:
198-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]