BtaEX6030181 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006686 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr6:20453972-20461728:-
Coord C1 exon
chr6:20461642-20461728
Coord A exon
chr6:20460973-20461071
Coord C2 exon
chr6:20453972-20454228
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTGGTAATTTCCTTGCAGGTG
3' ss Score
9.1
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTCCACGGCAGCCTTCAAATGACTTGTTTGAAATATTTGAAATTGAAAGAGGAGTCAGTGCAGATGATGAAGCAAAGGATGATCCAG
Seq A exon
GTGTTCTGATACACAGTTGTAATTTTGACCATGGGCTTTGTGGATGGATCCGGGAAAAAGACAGTGACGTGCACTGGGAACCAGTGAGGGATCCAGCAG
Seq C2 exon
GTGGACAGTATCTGACAGTCTCAGCAGCCAAAGGCCCGCTGGGAAGGGCCGCCCGCCTGCTGCTCCCTCTCGGCCACCTCCTGCATGCAGGGGACCTGTGCCTGTCATTCAGGCACAAGGTGACGGGGCTGCACTCCGGCACGCTCCAGGTGTTAGTGAGAAAACACGGTGCCCACGGAGCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACGCACATCACCCTGCGAGGGGCCGACATCAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006686-'27-24,'27-21,28-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.206 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
PF0062918=MAM=PU(19.0=79.4)
C2:
PF0062918=MAM=FE(59.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGAGGAGTCAGTGCAGA
R:
CGTCACCTTGTGCCTGAATGA
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]