MmuEX6074168 @ mm10
Exon Skipping
Gene
ENSMUSG00000040998 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr3:132885756-132891488:-
Coord C1 exon
chr3:132891402-132891488
Coord A exon
chr3:132890764-132890862
Coord C2 exon
chr3:132885756-132886012
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTGGCCACCTCCTTGCAGGTA
3' ss Score
10.07
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTCCACGGCAGCCGACAAATGACCTGTTTGAGATATTTGAAATCGAAAGAGGGGTCAGCGCGGATGAGGAAGTAAAGGACGACCCAG
Seq A exon
GTATTCTCATACACAGCTGCAATTTTGACCATGGACTCTGTGGATGGATCAGAGAAAAAGATAGTGACTTGCACTGGGAGACAGCCAGGGACCCAGCAG
Seq C2 exon
GTGGACAGTATCTCACAGTGTCTGCAGCCAAAGCCCCGGGGGGAAAAGCCGCTCGCTTGGTGTTACGTCTCGGCCACCTCATGCATTCAGGGGACCTGTGCCTGTCCTTTAGGCACAAGGTGACTGGGCTGCACTCGGGCACACTGCAGGTGTTTGTGAGGAAACACGGTACCCACGGAGCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACCCAGATCACCTTGCGAGGGGCTGACGTCAAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040998-'30-22,'30-19,32-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.622 A=0.210 C2=0.108
Domain overlap (PFAM):
C1:
NO
A:
PF0062918=MAM=PU(19.3=79.4)
C2:
PF0062918=MAM=FE(60.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCGACAAATGACCTGTT
R:
GTCCCCTGAATGCATGAGGTG
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types