RnoEX6011589 @ rn6
Exon Skipping
Gene
ENSRNOG00000052873 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr2:238004405-238010357:-
Coord C1 exon
chr2:238010271-238010357
Coord A exon
chr2:238009644-238009742
Coord C2 exon
chr2:238004405-238004661
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCCACCTCCTTGCAGGCA
3' ss Score
10.87
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTCCGAGGCAGCCTTCGAATGACCTGTTTGAAATATTTGAAATCGAAAGAGGAGTCAGCGCTGATGAGGAAGCGAAGGACGACCCAG
Seq A exon
GCATTCTCATACACAGCTGTAATTTTGACCATGGACTTTGTGGATGGATCAGAGAAAAGGATAGCGACTTGCACTGGGAGCCAACCAGGGACCCAGCAG
Seq C2 exon
GTGGACAGTATCTCACAGTGTCTGCAGCCAAAGCCCCGGGGGGAAAGGCTGCCCGCTTGGTGTTACCTCTCGGCCACCTCATGCATTCAGGGGACCTGTGCCTGTCCTTTAGGCACAAGGTGACTGGGCTGCACTCGGGCGCCCTGCAGGTGTTTGTGAGAAAACATGGTACCCACGGATCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACCCAGATCACCTTGCGAGGGGCTGACGTCAAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052873-'25-25,'25-23,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.235 C2=0.151
Domain overlap (PFAM):
C1:
NO
A:
PF0062918=MAM=PU(19.3=79.4)
C2:
PF0062918=MAM=FE(60.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCTTCGAATGACCTGTT
R:
GTCCCCTGAATGCATGAGGTG
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]