GgaEX0015752 @ galGal4
Exon Skipping
Gene
ENSGALG00000010566 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr4:38002812-38006888:-
Coord C1 exon
chr4:38006793-38006888
Coord A exon
chr4:38006323-38006421
Coord C2 exon
chr4:38002812-38003068
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTTTGGCTGTTCTGCCTAGGCA
3' ss Score
6.68
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTCCGCGCCAGCCCGGAGTGAGCAATAACCTGTTTGAAATACTTGAAATTGAAAGAGGGATTACTGCTGATGAATTTGAAGCAAATGATGACCCAG
Seq A exon
GCACGCTGGTACACAGCTGTAATTTTGACAGCGGCCTGTGTGGATGGATCAAGGACAAGGATGATGGTTTGCACTGGGAGCCAGTTAGAGACGTGTCAG
Seq C2 exon
GGGGACGATATCTCACCATCTCTGAACCCAAAGGCACAGAGGGAAAAGCAGCACATCTTATTCTGCCGCTGGGCCACGTGGCTCAGGCTGGGGACTTGTGCCTGTCATTCAGACATAAGGTGCCTGGGCTGCATTCGGGCGCCCTCCAAGTCTTTGTGAGGAGAAGTGGTGCTCATGGACCAGCTGTGTGGGGAAGGAACGGTGGCCACGGCTGGAGGCAGACACACATAACTCTGCGAGGACTGGGCATCAAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010566_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.525 A=0.078 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
PF0062918=MAM=PU(19.0=79.4)
C2:
PF0062918=MAM=FE(59.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGAGTGAGCAATAACCTG
R:
AAGTCCCCAGCCTGAGCC
Band lengths:
182-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]