HsaEX6085698 @ hg38
Exon Skipping
Gene
ENSG00000168743 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr4:105958471-105967444:+
Coord C1 exon
chr4:105958471-105958557
Coord A exon
chr4:105959028-105959126
Coord C2 exon
chr4:105967188-105967444
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTGATTATTTCCTTGTAGGTG
3' ss Score
9.31
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTCCACGGCAACCTTCAAATGACTTGTTTGAAATATTTGAAATAGAAAGAGGAGTCAGTGCAGACGATGAAGCAAAGGATGATCCAG
Seq A exon
GTGTTCTGGTACACAGTTGTAATTTTGACCATGGACTTTGTGGATGGATCAGGGAGAAAGACAATGACTTGCACTGGGAACCAATCAGGGACCCAGCAG
Seq C2 exon
GTGGACAATATCTGACAGTGTCGGCAGCCAAAGCCCCAGGGGGAAAAGCTGCACGCTTGGTGCTACCTCTCGGCCGCCTCATGCATTCAGGGGACCTGTGCCTGTCATTCAGGCACAAGGTGACGGGGCTGCACTCTGGCACACTCCAGGTGTTTGTGAGAAAACACGGTGCCCACGGAGCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACACAGATCACCTTGCGAGGGGCTGACATCAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168743-'34-46,'34-43,35-46=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.753 A=0.209 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
PF0062918=MAM=PU(23.5=79.4)
C2:
PF0062918=MAM=FE(73.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAGTCAGTGCAGACGA
R:
CCGTCACCTTGTGCCTGAATG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains