DreEX6033259 @ danRer10
Exon Skipping
Gene
ENSDARG00000018721 | npnt
Description
nephronectin [Source:ZFIN;Acc:ZDB-GENE-090312-201]
Coordinates
chr1:49539932-49541638:+
Coord C1 exon
chr1:49539932-49540021
Coord A exon
chr1:49540632-49540730
Coord C2 exon
chr1:49541379-49541638
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATAAAATTGTGCTATTGCAGAGT
3' ss Score
5.64
5' ss Seq
CGGGTTGGT
5' ss Score
3.35
Exon sequences
Seq C1 exon
TACCACGAAATCATGGGAAGAACAATGTTCTTGGTATCGATTTAGACATTGAACTGGGCAACACCGAAGAGGAGCTGAAGGATGACCCAG
Seq A exon
AGTCTGGCTATCTGAGCTGCTCATTTGATCACGGTTTGTGTGGATGGATCCAGCGCAGAGAGGGAGACCTTCATTGGGAGACATCGGAAGATCCTTCGG
Seq C2 exon
GTGGGAGGTACCTAACCATCTCTGAGGGCGGGGAGAAGCGTGGTGGGCGTGGTGCTCAGCTGATCCTCCCCCTGAAAACCCCCTGGAACGAGGGGAACCTGTGCTTGGCCTTCAGACACAACATGGCAGGTCACCATGTGGGAATGCTGCAGGTGTTCGTACAGAAAGGTCGGCAGCACAGTCCCGCTGTCTGGGGACGAACAGGAGGAAACGGCTGGAGGTCCACACAGATCACCCTTTGGGGCAATGGGCTAGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018721-'15-11,'15-10,16-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.206 C2=0.253
Domain overlap (PFAM):
C1:
NO
A:
PF0062918=MAM=PU(18.9=79.4)
C2:
PF0062918=MAM=FE(60.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCTGAAGGATGACCCA
R:
TACGAACACCTGCAGCATTCC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]