BtaEX6031469 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006837 | UBA6
Description
Bos taurus ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001083438]
Coordinates
chr6:85079433-85081404:-
Coord C1 exon
chr6:85081337-85081404
Coord A exon
chr6:85080552-85080630
Coord C2 exon
chr6:85079433-85079513
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTTGTTTTCTCCAGAGG
3' ss Score
9.57
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TTATACATTGAAGCAGCAGATCTTGTCGAATCCCTCAGCAAACCTGAACGACAAGAATTTCTCCCACG
Seq A exon
AGGAGATAGATATGATGCCTTACGAGCCTGCATTGGAGACACTTTATGTCAGAAGCTACAAAATTTGAATATCTTTTTA
Seq C2 exon
GTAGGATGTGGAGCCATAGGCTGTGAAATGTTAAAAAATTTTGCTTTGCTTGGTGTTGGCACAGGCAAACAGAAGGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006837-'16-22,'16-21,17-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGAAGCAGCAGATCTTGT
R:
TTCCCTTCTGTTTGCCTGTGC
Band lengths:
143-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]