DreEX0009203 @ danRer10
Exon Skipping
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19175805-19177067:+
Coord C1 exon
chr1:19175805-19175872
Coord A exon
chr1:19176760-19176838
Coord C2 exon
chr1:19176987-19177067
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTCATGTTTTGTAGGGG
3' ss Score
8.75
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTTTATCTGGATGCATTAGAGGTTGTACAGCCCCTCCAGTCTCTTCCTGCTGAGGAATTTTCCCCAAG
Seq A exon
GGGTGACCGGTACGATGCATTGCGGGCATGTATCGGCCAGTCGCTGTGTTTGAAACTGCACAAGTTTCAAGTCTTCATG
Seq C2 exon
GTGGGCTGTGGTGCTATTGGCTGTGAGATGCTGAAGAACTTGGCACTTCTGGGTGTGGGATTGAGTAGATTTTTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019-'17-16,'17-15,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGATGCATTAGAGGTTGTACA
R:
TCTCCCAAAAATCTACTCAATCCCAC
Band lengths:
143-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]