RnoEX0095607 @ rn6
Exon Skipping
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23533865-23536657:+
Coord C1 exon
chr14:23533865-23533932
Coord A exon
chr14:23535570-23535648
Coord C2 exon
chr14:23536577-23536657
Length
79 bp
Sequences
Splice sites
3' ss Seq
CCTTGGTAACTGTTCTTCAGAGG
3' ss Score
4.75
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TTGTATCTTGAAGCAGCAGATACCGTGGAATCCCTAGGCAATCTTGGGCATGAAGAGTTTCTCCCACG
Seq A exon
AGGAGATAGATACGATGCCTTCCGTGCCTGCATTGGAAATACATTATGTCAGAAGCTACAGAACTTGAATATCTTCTTA
Seq C2 exon
GTAGGATGTGGCGCCATAGGCTGTGAAATGTTAAAAAATTTTGCATTACTGGGTGTTGGTACAGGTAGAGAGAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931-'21-22,'21-20,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAAGCAGCAGATACCGTG
R:
CATTCCTTTCTCTCTACCTGTACCA
Band lengths:
144-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]