MmuEX6018426 @ mm9
Exon Skipping
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86569381-86571497:-
Coord C1 exon
chr5:86571430-86571497
Coord A exon
chr5:86570573-86570651
Coord C2 exon
chr5:86569381-86569461
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTTGGTAAATGTTTTTTCAGAGG
3' ss Score
5.9
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TTGTACCTTGAAGCAGCAGATACTGTGGAATCCCTAGGCAATCCTGGGCATGAAGAGTTTCTCCCACG
Seq A exon
AGGAGATAGATATGATGCCATACGTGCCTGCATTGGAAATACATTGTGTCAGAAGCTACAAAATTTGAATATCTTCTTA
Seq C2 exon
GTAGGATGTGGTGCCATAGGCTGTGAAATGTTAAAAAATTTTGCATTACTGGGTGTTGGTACAGGCAGAGAGAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898-'18-18,'18-16,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGAAGCAGCAGATACTGTG
R:
TTCCTTTCTCTCTGCCTGTACCA
Band lengths:
143-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: