GgaEX6034916 @ galGal4
Exon Skipping
Gene
ENSGALG00000011762 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr4:51049176-51051703:-
Coord C1 exon
chr4:51051636-51051703
Coord A exon
chr4:51051307-51051385
Coord C2 exon
chr4:51049176-51049256
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCTGCCTCACTTTAGGGG
3' ss Score
9.79
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
TTGTATATAGATATGTTAGACATCGTTACACCTCTAGAAAAGATGGGCTCTGAAGAATTTCTTCCACG
Seq A exon
GGGAGATAGATATGATGCCTTGAGGGCTTGTATTGGAGAGTCTCTGTGCCAGAAGCTGCATGATTTGAATGTTTTCTTG
Seq C2 exon
GTTGGCTGTGGAGCAATAGGCTGTGAAATGCTAAAAAACTTTGCACTTCTTGGTGTTGGTACTGGACAAGATAAAGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762-'24-28,'24-25,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTAGACATCGTTACACCTCT
R:
ATCCTTTATCTTGTCCAGTACCAACA
Band lengths:
135-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]