HsaEX6084564 @ hg19
Exon Skipping
Gene
ENSG00000033178 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:25581]
Coordinates
chr4:68510416-68512509:-
Coord C1 exon
chr4:68512442-68512509
Coord A exon
chr4:68511656-68511734
Coord C2 exon
chr4:68510416-68510496
Length
79 bp
Sequences
Splice sites
3' ss Seq
GTATATGTTATTTTTTTCAGAGG
3' ss Score
7.73
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TTATATCTTGAAGCAGCAGATATTGTTGAATCACTAGGCAAACCTGAATGTGAAGAATTTCTCCCACG
Seq A exon
AGGAGATAGATATGATGCCTTAAGAGCTTGCATTGGAGACACTTTGTGTCAGAAACTGCAAAATTTAAACATCTTCTTA
Seq C2 exon
GTAGGGTGTGGAGCCATAGGCTGTGAAATGTTGAAAAATTTTGCTTTACTTGGTGTTGGCACAAGCAAAGAGAAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178-'22-20,'22-18,23-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0089916=ThiF=PU(4.1=22.2)
C2:
PF0089916=ThiF=PU(17.5=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTGAAGCAGCAGATATTGTTGA
R:
TTCCTTTCTCTTTGCTTGTGCCA
Band lengths:
143-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)