BtaEX6031665 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002348 | SLC4A4
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 4 (SLC4A4), mRNA. [Source:RefSeq mRNA;Acc:NM_174605]
Coordinates
chr6:88396451-88440532:+
Coord C1 exon
chr6:88396451-88396527
Coord A exon
chr6:88432530-88432687
Coord C2 exon
chr6:88440445-88440532
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTTGGCTCTTCCCATGCAGCTG
3' ss Score
9.36
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTAGCCCAGCCATGACCCACAGGAATCTGACTTCTTCCAGCCTGAATGACATTTCTGATAAACCAGAGAAGGACCAG
Seq A exon
CTGAAGAATAAGTTCATGAAAAAACTGCCACGTGATGCAGAAGCTTCCAACGTGCTTGTTGGCGAGGTAGACTTCTTGGATTCTCCTTTCATTGCTTTTGTTCGGCTGCAGCAGGCAGTCATGCTGGGTGCCCTGACTGAGGTCCCTGTGCCCACAAG
Seq C2 exon
GTTCTTATTCATTCTCTTAGGTCCTAAGGGGAAAGCCAAGTCCTACCATGAGATCGGCAGAGCCATTGCCACCTTGATGTCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002348-'19-11,'19-10,23-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(9.9=100)
A:
PF075658=Band_3_cyto=FE(20.6=100)
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCCAGCCATGACCCAC
R:
TCATCAGACATCAAGGTGGCA
Band lengths:
163-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]