GgaEX1053589 @ galGal4
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49716116-49743105:+
Coord C1 exon
chr4:49716116-49716192
Coord A exon
chr4:49734379-49734536
Coord C2 exon
chr4:49743018-49743105
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTCTACTAATGCAGTTG
3' ss Score
7
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
GCAGTCCAGCCATGACTCACAGAAATCTGACTTCCACCAGTCTGAATGACATCTCTGACAAGCCTGAGAAAGATCAG
Seq A exon
TTGAAGAATAAATTCATGAAGAAATTACCCCGTGATGCTGAGGCCTCCAACGTGCTGGTTGGGGAGGTAGACTTCCTGGACAGTCCTTTCATTGCCTTCGTCCGGCTGCAGCAGGCAGTTATGTTGGGTGCTCTGACAGAAGTCCCCGTCCCTACGCG
Seq C2 exon
ATTTCTCTTCATTCTACTGGGACCTAAGGGCAAAGCAAAGTCATATCATGAGATTGGCCGAGCCATTGCTACCCTCATGTCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'19-17,'19-15,23-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.744 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(9.9=100)
A:
PF075658=Band_3_cyto=FE(20.6=100)
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAGCCATGACTCACAGA
R:
TCATCAGACATGAGGGTAGCA
Band lengths:
162-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]