MmuEX6018657 @ mm9
Exon Skipping
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89513667-89558751:+
Coord C1 exon
chr5:89513667-89513743
Coord A exon
chr5:89551427-89551584
Coord C2 exon
chr5:89558664-89558751
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTTGGCCCTTCCCATGCAGCTG
3' ss Score
9.23
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCAGCCCAGCCATGACCCACAGGAATCTGACATCCTCCAGTCTCAATGACATTTCTGATAAACCAGAGAAGGATCAG
Seq A exon
CTGAAGAATAAATTCATGAAAAAACTGCCCCGAGATGCGGAAGCTTCCAATGTGCTTGTTGGGGAGGTTGACTTCTTGGACACTCCCTTCATTGCCTTTGTTCGCCTACAGCAGGCTGTCATGCTGGGTGCCCTGACTGAGGTCCCTGTGCCCACAAG
Seq C2 exon
GTTCTTGTTCATTCTCTTAGGTCCAAAGGGGAAAGCCAAGTCCTACCATGAGATTGGAAGAGCTATCGCCACCTTGATGTCTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961-'12-15,'12-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.3=100)
A:
PF075658=Band_3_cyto=FE(21.4=100)
C2:
PF075658=Band_3_cyto=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCAGCCATGACCCA
R:
CTCGTCAGACATCAAGGTGGC
Band lengths:
164-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: