RnoEX6041891 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20580421-20619328:-
Coord C1 exon
chr14:20619252-20619328
Coord A exon
chr14:20587174-20587331
Coord C2 exon
chr14:20580421-20580508
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCCCTTTCCGTGCAGCTG
3' ss Score
10.35
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTAGCCCAGCTATGACCCACAGGAATCTGACATCCTCCAGTCTCAATGACATTTCTGATAAACCAGAGAAGGACCAG
Seq A exon
CTGAAGAATAAATTCATGAAAAAACTGCCCCGTGATGCAGAAGCTTCCAACGTGCTCGTTGGGGAGGTTGACTTCTTGGACACTCCCTTCATTGCCTTTGTTCGTCTACAGCAGGCTGTCATGCTGGGTGCCCTGACTGAGGTGCCTGTGCCCACAAG
Seq C2 exon
GTTCTTGTTCATTCTCTTAGGTCCAAAGGGGAAAGCCAAGTCCTACCATGAGATCGGAAGAGCCATCGCCACCTTGATGTCTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-'26-22,'26-21,27-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.827 A=0.132 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(9.9=100)
A:
PF075658=Band_3_cyto=FE(20.6=100)
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCCAGCTATGACCCACAG
R:
CTCGTCAGACATCAAGGTGGC
Band lengths:
164-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]