MmuEX6018657 @ mm10
Exon Skipping
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89084642-89129726:+
Coord C1 exon
chr5:89084642-89084718
Coord A exon
chr5:89122402-89122559
Coord C2 exon
chr5:89129639-89129726
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTTGGCCCTTCCCATGCAGCTG
3' ss Score
9.23
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCAGCCCAGCCATGACCCACAGGAATCTGACATCCTCCAGTCTCAATGACATTTCTGATAAACCAGAGAAGGATCAG
Seq A exon
CTGAAGAATAAATTCATGAAAAAACTGCCCCGAGATGCGGAAGCTTCCAATGTGCTTGTTGGGGAGGTTGACTTCTTGGACACTCCCTTCATTGCCTTTGTTCGCCTACAGCAGGCTGTCATGCTGGGTGCCCTGACTGAGGTCCCTGTGCCCACAAG
Seq C2 exon
GTTCTTGTTCATTCTCTTAGGTCCAAAGGGGAAAGCCAAGTCCTACCATGAGATTGGAAGAGCTATCGCCACCTTGATGTCTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961-'35-21,'35-19,37-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=0.135 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.3=100)
A:
PF075658=Band_3_cyto=FE(21.4=100)
C2:
PF075658=Band_3_cyto=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCAGCCATGACCCA
R:
CTCGTCAGACATCAAGGTGGC
Band lengths:
164-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types