HsaEX6084756 @ hg19
Exon Skipping
Gene
ENSG00000080493 | SLC4A4
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 4 [Source:HGNC Symbol;Acc:11030]
Coordinates
chr4:72263294-72313450:+
Coord C1 exon
chr4:72263294-72263370
Coord A exon
chr4:72306333-72306490
Coord C2 exon
chr4:72313363-72313450
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCTTGGTTCTTCTCATGCAGCTG
3' ss Score
8.91
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTAGCCCAGCCATGACCCATAGGAATCTGACTTCCTCCAGTCTGAATGACATTTCTGATAAACCGGAGAAGGACCAG
Seq A exon
CTGAAGAATAAGTTCATGAAAAAATTGCCACGTGATGCAGAAGCTTCCAACGTGCTTGTTGGGGAGGTTGACTTTTTGGATACTCCTTTCATTGCCTTTGTTAGGCTACAGCAGGCTGTCATGCTGGGTGCCCTGACTGAAGTTCCTGTGCCCACAAG
Seq C2 exon
GTTCTTGTTCATTCTCTTAGGTCCTAAGGGGAAAGCCAAGTCCTACCACGAGATTGGCAGAGCCATTGCCACCCTGATGTCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080493-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.129 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.8=100)
A:
PF075658=Band_3_cyto=FE(20.6=100)
C2:
PF075658=Band_3_cyto=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCCAGCCATGACCCATAG
R:
TCATCAGACATCAGGGTGGCA
Band lengths:
163-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)