BtaEX6031669 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002348 | SLC4A4
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 4 (SLC4A4), mRNA. [Source:RefSeq mRNA;Acc:NM_174605]
Coordinates
chr6:88235022-88334988:+
Coord C1 exon
chr6:88235022-88235095
Coord A exon
chr6:88257753-88257932
Coord C2 exon
chr6:88334853-88334988
Length
180 bp
Sequences
Splice sites
3' ss Seq
GATTTGTGTTCCTTCCTCAGGCC
3' ss Score
9.68
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GATGGAGGATGAAGCTGTCCTGGACAGAGGGGCTTCCTTCCTTAAGCATGTGTGTGATGAAGAAGAAGTAGAAG
Seq A exon
GCCACCACACCATCTACATTGGGGTCCATGTGCCAAAGAGCTACCGGAGAAGGAGACGTCACAAGAGAAAGACAGGCCACCGAGAAAAGAAGGAAAAGGAGAGAATCTCTGAGAACTATTCTGACAAGTCAGATGTGGAGAACGCGGATGAGTCCAGCAGCAGCATCCTGAAGCCTCTCA
Seq C2 exon
TCTCTCCTGCAGCAGAACGCATCCGATTCATCTTGGGCGAGGAGGATGACAGCCCAGCACCCCCTCAGCTCTTCACGGAACTGGATGAGCTGCTGGCCGTGGATGGGCAAGAGATGGAGTGGAAGGAGACGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002348-'6-3,'6-1,9-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.672 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGGATGAAGCTGTCCTG
R:
CTCGCCGTCTCCTTCCACTC
Band lengths:
210-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]