MmuEX0043409 @ mm9
Exon Skipping
Gene
ENSMUSG00000060961 | Slc4a4
Description
solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
Coordinates
chr5:89363774-89457453:+
Coord C1 exon
chr5:89363774-89363847
Coord A exon
chr5:89383803-89383982
Coord C2 exon
chr5:89457318-89457453
Length
180 bp
Sequences
Splice sites
3' ss Seq
GACTTGTCTACCGTCCTTAGGTC
3' ss Score
8.87
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GATGGAGGATGAAGCTGTCCTGGACAGAGGGGCTTCCTTCCTTAAACATGTGTGTGATGAAGAAGAAGTAGAAG
Seq A exon
GTCACCACACGATCTACATTGGGGTCCATGTGCCCAAGAGCTACCGGAGAAGGAGACGCCACAAGAGGAAGGCTGGGCACAAGGAAAAGAAGGAAAAGGAGAGAATCTCCGAGAACTACTCCGACAAATCTGATGTGGAGAATGCGGATGAGTCCAGCAGCAGTATCCTCAAACCCCTCA
Seq C2 exon
TCTCCCCGGCCGCAGAACGCATCCGATTCATCTTGGGAGAGGAAGATGACAGCCCGGCACCTCCTCAGCTCTTCACGGAACTCGATGAGCTTCTGGCTGTGGATGGACAGGAGATGGAATGGAAGGAGACAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060961-'3-7,'3-3,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.674 C2=0.183
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGGATGAAGCTGTCCTG
R:
CTCGCTGTCTCCTTCCATTCC
Band lengths:
210-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: