RnoEX0082824 @ rn6
Exon Skipping
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20673452-20769564:-
Coord C1 exon
chr14:20769491-20769564
Coord A exon
chr14:20749845-20750024
Coord C2 exon
chr14:20673452-20673587
Length
180 bp
Sequences
Splice sites
3' ss Seq
GACTTGTCTACCGTCCTTAGGTC
3' ss Score
8.87
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GATGGAGGATGAAGCTGTCCTGGACAGAGGGGCTTCCTTCCTTAAACATGTGTGTGACGAAGAAGAAGTAGAAG
Seq A exon
GTCACCACACGATCTACATTGGGGTCCATGTGCCCAAGAGCTACCGGAGAAGGAGACGCCATAAGAGAAAGGCTGGGCACAAGGAAAAGAAGGAGAAGGAAAGGATCTCTGAGAACTATTCCGACAAATCAGATGTGGAGAATGCGGACGAATCCAGCAGCAGCATCCTCAAGCCGCTCA
Seq C2 exon
TCTCCCCGGCCGCAGAACGTATCCGATTCATCTTGGGAGAGGAAGATGACAGCCCAGCACCTCCTCAGCTCTTCACGGAACTCGATGAGCTGCTGGCTGTGGATGGACAGGAGATGGAATGGAAGGAGACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134-'13-13,'13-10,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.587 C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGGATGAAGCTGTCCTG
R:
CTGGCTGTCTCCTTCCATTCC
Band lengths:
210-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]