DreEX6012900 @ danRer10
Exon Skipping
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45218736-45269844:-
Coord C1 exon
chr5:45269771-45269844
Coord A exon
chr5:45252460-45252633
Coord C2 exon
chr5:45218736-45218871
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCAATTCTTTTCCCTTTCAGGTC
3' ss Score
12.7
5' ss Seq
TCAGTAAGC
5' ss Score
5.59
Exon sequences
Seq C1 exon
GGTGGAGGATGAGGCCGTGCTGGACCGAGGGGCATCGCTGCTCAAACCCTTGTGTGATCAGGAGGAGGTTGAAG
Seq A exon
GTCACCACACCATATACATCGGTGTGCATGTGCCAAAGAGCTACCGGCGACGGAGACGTCATCGCCGACGCACCAGTCACAAGGACAGAAAGGAGAAAGTGAGCGAGAACACTTCGGACAGGTCGGATGCAGAGAACAATGAGGAGGCCAGCAACAGCATCCTTAAACCACTCA
Seq C2 exon
TTTCACCTGCTGCCGAGCGCATACGATTCATCCTGGGTGAGGACGATGACAGTCCTGCGCCTCCTCAACTTTTCACGGAGCTGGACGAGCTGCTGTCGGTGGACGGACAGGAGATGGAATGGAAGGAAACCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.712 C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGGATGAGGCCGT
R:
CTGGCGGTTTCCTTCCATTCC
Band lengths:
210-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]