GgaEX6034859 @ galGal4
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
Coordinates
chr4:49629344-49696094:+
Coord C1 exon
chr4:49629344-49629417
Coord A exon
chr4:49647065-49647244
Coord C2 exon
chr4:49695959-49696094
Length
180 bp
Sequences
Splice sites
3' ss Seq
GTTGTATTCCTATTCCTTAGGTC
3' ss Score
8.37
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GATGGAGGACGAGGCAGTACTGGATAGAGGGGCTTCCTTCCTTAAACATGTATGTGATGAAGAAGAAGTGGAAG
Seq A exon
GTCATCACACTGTTTACATTGGGGTCCACGTGCCGAAGAGCTACAGGAGAAGGCGGCGTCATAGGAGAAGACCTGGGCACAAAGAAAAGAAAGAAAAGGAGAAAATTTCTGAGAATTACTCTGACAAATCAGACGTAGAAAATGCTGATGAGACAAGCAGCAGCATCCTCAAACCACTCA
Seq C2 exon
TCTCCCCCGCTGCTGAACGTGTCCGCTTCATTCTGGGAGAGGAAGATGACAGCCCAGCACCCCCACAGCTTTTCACGGAGCTGGATGAGCTTCTGGCTGTTGATGGACAAGAAATGGAATGGAAGGAGACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'5-5,'5-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=0.721 C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGGACGAGGCAGTACT
R:
CTTGCAGTCTCCTTCCATTCCA
Band lengths:
210-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]