GgaEX6034859 @ galGal3
Exon Skipping
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51715393-51782685:+
Coord C1 exon
chr4:51715393-51715466
Coord A exon
chr4:51733656-51733835
Coord C2 exon
chr4:51782550-51782685
Length
180 bp
Sequences
Splice sites
3' ss Seq
GTTGTATTCCTATTCCTTAGGTC
3' ss Score
8.37
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GATGGAGGACGAGGCAGTACTGGATAGAGGGGCTTCCTTCCTTAAACATGTATGTGATGAAGAAGAAGTGGAAG
Seq A exon
GTCATCACACTGTTTACATTGGGGTCCACGTGCCGAAGAGCTACAGGAGAAGGCGGCGTCATAGGAGAAGACCTGGGCACAAAGAAAAGAAAGAAAAGGAGAAAATTTCTGAGAATTACTCTGACAAATCAGACGTAGAAAATGCTGATGAGACAAGCAGCAGCATCCTCAAACCACTCA
Seq C2 exon
TCTCCCCCGCTGCTGAACGTGTCCGCTTCATTCTGGGAGAGGAAGATGACAGCCCAGCACCCCCACAGCTTTTCACGGAGCTGGATGAGCTTCTGGCTGTTGATGGACAAGAAATGGAATGGAAGGAGACTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.705 C2=0.174
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGGACGAGGCAGTACT
R:
CTTGCAGTCTCCTTCCATTCCA
Band lengths:
210-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]