DreEX6083049 @ danRer10
Exon Skipping
Gene
ENSDARG00000044808 | slc4a4b
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4b [Source:ZFIN;Acc:ZDB-GENE-091030-1]
Coordinates
chr21:5919726-5936758:+
Coord C1 exon
chr21:5919726-5919796
Coord A exon
chr21:5929721-5929894
Coord C2 exon
chr21:5936623-5936758
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTCCACACTTTAAGGTC
3' ss Score
9.07
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
AATGGAGGATGAAGCTGTAGTGGACAGAGGAGCATCGTACATCAAAAACGTGTGTGACGAGGAGGTCGAAG
Seq A exon
GTCATCACACAGTCTACATTGGTGTTAATGTGCCTAAAAGTTACCGGCGGCGCCGCCGACACAGACGACGATCCAGTCACAGAGAGAGACGGGAACGAGTGACGGAGAACGTGAGCGACAAATCAGACACCGAGAACGCAGACGACTCCTCGTCCAGCATCCTCAAACCACTCA
Seq C2 exon
TTTCTCCGGCAGCAGAGCGAATACGCTTCATTTTGGGTGAAGATGACAGTGGTCCTCCCCCACCGCAGCTCTTCACCGAACTTGACGAACTTCTTGCCGTTGACGGACAGGAACTGGAGTGGAAGGAAACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044808-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.678 C2=0.304
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGATGAAGCTGTAGTGGA
R:
GGCTGTTTCCTTCCACTCCAG
Band lengths:
203-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]