BtaEX6031868 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010956 | SCARB2
Description
Bos taurus scavenger receptor class B, member 2 (SCARB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102153]
Coordinates
chr6:92814168-92824581:-
Coord C1 exon
chr6:92824490-92824581
Coord A exon
chr6:92818273-92818392
Coord C2 exon
chr6:92814168-92814337
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTTCCCTGTGACAGGTC
3' ss Score
10.09
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
AAAAATGGGACTAATGATGGAGATTATGTTTTTCTAACTGGAGAAGACAATTACCTTAACTTTTCCAAGATTGTGGAATGGAATGGGAAAAC
Seq A exon
GTCGCTTGACTGGTGGACAGCAGATGAGTGCAATATGATCAATGGAACAGATGGAGACACTTTTCACCCGTTAATCACCAGAGATGAAGTCCTTTATGTCTTCCCATCTGATTTTTGCAG
Seq C2 exon
GTCAGTGTATATAACTTTCAGTGACTTTGAGAGTGTCCAGGGACTGCCTGCCTTGAGGTATAAGGTGCCTGCAGAAATATTAGCCAATACCTCAGACAACGCTGGCTTCTGTATACCTAAAGGAAACTGCCTGGGTTCAGGAGTTTTGAATGTCAGCGTCTGCAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010956-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(6.7=100)
A:
PF0113016=CD36=FE(8.9=100)
C2:
PF0113016=CD36=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACTAATGATGGAGATTATGTT
R:
TCTTGCAGACGCTGACATTCA
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]