RnoEX6041768 @ rn6
Exon Skipping
Gene
ENSRNOG00000002225 | Scarb2
Description
scavenger receptor class B, member 2 [Source:RGD Symbol;Acc:621882]
Coordinates
chr14:17101808-17107208:+
Coord C1 exon
chr14:17101808-17101899
Coord A exon
chr14:17106302-17106421
Coord C2 exon
chr14:17107039-17107208
Length
120 bp
Sequences
Splice sites
3' ss Seq
TATTCTCTCCTGTACCATAGGTC
3' ss Score
9.55
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
AGAAATGGAACTAATGATGGGGAGTATGTTTTTCTGACTGGAGAGGACAATTACCTGAACTTTACAAAAATTGTGGAGTGGAATGGAAAAAC
Seq A exon
GTCGCTGGACTGGTGGACGACGGACACGTGCAATATGATCAACGGGACAGACGGAGATTCTTTTCACCCATTAATAAGCAAGGATGAGACCCTGTACATCTTCCCATCTGACTTCTGCAG
Seq C2 exon
GTCCGTCTATATAACTTTCAGTAGCTTTGAGAACGTAGAAGGACTGCCTGCTTTTCGGTATAAGGTGCCTGCAGAAATACTAGCCAATTCCTCCGAAAACGCTGGCTTCTGTATACCCGAGGGAAACTGCATGGACGCGGGAGTGCTGAACGTCAGCATTTGCAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002225-'4-13,'4-12,6-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(6.7=100)
A:
PF0113016=CD36=FE(8.9=100)
C2:
PF0113016=CD36=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAGTATGTTTTTCTGACTGG
R:
TCTTGCAAATGCTGACGTTCA
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]