HsaEX6084933 @ hg38
Exon Skipping
Gene
ENSG00000138760 | SCARB2
Description
scavenger receptor class B member 2 [Source:HGNC Symbol;Acc:HGNC:1665]
Coordinates
chr4:76174144-76176528:-
Coord C1 exon
chr4:76176437-76176528
Coord A exon
chr4:76175791-76175910
Coord C2 exon
chr4:76174144-76174313
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTGTGCTTATCAATTATAGGTC
3' ss Score
8.72
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAAAATGGGACTAATGATGGAGACTATGTTTTTCTAACTGGAGAAGACAGTTACCTTAACTTTACAAAAATTGTGGAATGGAATGGGAAAAC
Seq A exon
GTCACTTGACTGGTGGATAACAGACAAGTGCAATATGATTAATGGAACAGATGGAGATTCTTTTCACCCACTAATAACCAAAGATGAGGTCCTTTATGTCTTCCCATCTGACTTTTGCAG
Seq C2 exon
GTCAGTGTATATTACTTTCAGTGACTATGAGAGTGTACAGGGACTGCCTGCCTTTCGGTATAAAGTTCCTGCAGAAATATTAGCCAATACGTCAGACAATGCCGGCTTCTGTATACCTGAGGGAAACTGCCTGGGCTCAGGAGTTCTGAATGTCAGCATCTGCAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138760_MULTIEX1-5/6=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(12.8=100),PF0113016=CD36=PU(0.1=0.0)
A:
PF0113016=CD36=PD(3.5=7.3),PF0113016=CD36=PU(17.8=97.6)
C2:
PF0113016=CD36=PD(3.8=15.5),PF0113016=CD36=PU(30.8=98.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACTAATGATGGAGACTATGT
R:
TCTTGCAGATGCTGACATTCA
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains