HsaEX6084933 @ hg19
Exon Skipping
Gene
ENSG00000138760 | SCARB2
Description
scavenger receptor class B, member 2 [Source:HGNC Symbol;Acc:1665]
Coordinates
chr4:77095297-77117017:-
Coord C1 exon
chr4:77116860-77117017
Coord A exon
chr4:77096944-77097063
Coord C2 exon
chr4:77095297-77095466
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTGTGCTTATCAATTATAGGTC
3' ss Score
8.72
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAAATTGTGTTAAGGAATGGTACTGAGGCATTTGACTCCTGGGAGAAGCCCCCTCTGCCTGTGTATACTCAGTTCTATTTCTTCAATGTCACCAATCCAGAGGAGATCCTCAGAGGGGAGACCCCTCGGGTGGAAGAAGTGGGGCCATACACCTACAG
Seq A exon
GTCACTTGACTGGTGGATAACAGACAAGTGCAATATGATTAATGGAACAGATGGAGATTCTTTTCACCCACTAATAACCAAAGATGAGGTCCTTTATGTCTTCCCATCTGACTTTTGCAG
Seq C2 exon
GTCAGTGTATATTACTTTCAGTGACTATGAGAGTGTACAGGGACTGCCTGCCTTTCGGTATAAAGTTCCTGCAGAAATATTAGCCAATACGTCAGACAATGCCGGCTTCTGTATACCTGAGGGAAACTGCCTGGGCTCAGGAGTTCTGAATGTCAGCATCTGCAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138760-'1-8,'1-7,9-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(60.5=100),PF0113016=CD36=PU(0.1=0.0)
A:
PF0113016=CD36=PD(3.5=7.3),PF0113016=CD36=PU(17.8=97.6)
C2:
PF0113016=CD36=FE(12.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCATTTGACTCCTGGGAGA
R:
TCAGGTATACAGAAGCCGGCA
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)