MmuEX6018869 @ mm10
Exon Skipping
Gene
ENSMUSG00000029426 | Scarb2
Description
scavenger receptor class B, member 2 [Source:MGI Symbol;Acc:MGI:1196458]
Coordinates
chr5:92454040-92460133:-
Coord C1 exon
chr5:92460042-92460133
Coord A exon
chr5:92454732-92454851
Coord C2 exon
chr5:92454040-92454209
Length
120 bp
Sequences
Splice sites
3' ss Seq
TATTCTTTCCTGTACTATAGGTC
3' ss Score
9.99
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
AGAAATGGAACGAATGACGGGGAGTACGTGTTTCTGACTGGAGAGGACAATTACCTTAACTTTTCAAAAATCGTGGAGTGGAATGGAAAAAC
Seq A exon
GTCGCTGGACTGGTGGACCACAGACACATGCAATATGATTAACGGGACAGACGGAGACTCTTTTCATCCGCTGATAAGCAAGGATGAGGTCCTGTACCTCTTCCCGTCAGACTTGTGCAG
Seq C2 exon
GTCAGTACATATCACTTTCAGCAGCTTTGAGAACGTAGAAGGACTGCCTGCTTTTCGGTATAAGGTGCCTGCAGAAATACTAGCCAACACCTCCGAAAACGCTGGCTTCTGTATACCCGAGGGAAACTGCATGGACTCAGGGGTGTTGAACATCAGCATCTGCAAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029426-'11-7,'11-6,13-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(6.7=100)
A:
PF0113016=CD36=FE(11.0=100)
C2:
PF0113016=CD36=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGACGGGGAGTACGTGTT
R:
AGATGCTGATGTTCAACACCCC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types