GgaEX1051065 @ galGal3
Exon Skipping
Gene
ENSGALG00000011499 | SCARB2
Description
NA
Coordinates
chr4:51423226-51425293:+
Coord C1 exon
chr4:51423226-51423317
Coord A exon
chr4:51424058-51424177
Coord C2 exon
chr4:51425115-51425293
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTTCGTTTTCTTCAGGTC
3' ss Score
12.31
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGAATGGAACTGATGATGGCGAATATGTTTTCCTAAGTGGAGAAATGAACTACCTTAACTTCTCAAGAATTGTGGAATGGAAAGGAAAAGA
Seq A exon
GTCATTGAACTGGTGGACAACAAAGACTTGTAACATGATCAATGGAACGGATGGGACATCTTTTCATCCACTGATTAGCAAAGATGAGAACATTTATATATTTTCTTCTGATTTCTGCAG
Seq C2 exon
ATCTCTTTATCTGGTGTATGACAGCTCAGGAAGTGTTGCAGGCGTCCCAACCTACCGCTTTGTGCCCTCCCCTATGGTGTTTGCCAACACCACTGTTAACCCAGACAACGCTGGATTCTGTGTACCACCAGGAAACTGCCCTGGTGCTGGTGTCCTCAATGTCAGCATCTGCAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011499-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(6.6=100)
A:
PF0113016=CD36=FE(8.8=100)
C2:
PF0113016=CD36=FE(13.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGGAACTGATGATGGCGA
R:
GACATTGAGGACACCAGCACC
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]