BtaEX6032851 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019427 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr6:118156168-118164556:+
Coord C1 exon
chr6:118156168-118156234
Coord A exon
chr6:118157451-118157532
Coord C2 exon
chr6:118161247-118164556
Length
82 bp
Sequences
Splice sites
3' ss Seq
AATTTTTGTTTCGTTAACAGAAG
3' ss Score
6.98
5' ss Seq
AATGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
AGCTCTGGCATTGAGACTTTAGTGGAGGAGCTCTGCTCCAGGCTGAAGGACCTGCAGAGCCAGCAAG
Seq A exon
AAGAGAAGATTCACAAGAAGTTAGAGGGGTCTCCCTCTCCAGAGGCAGAATTATCGCCCACAGCGAAGGATCAAGTGGAAAT
Seq C2 exon
GTACTATGAAGCGTTTCCACCGCTGTCCGAGAAGCCAGTTTGCCTGCAGGAAATCATGACCGTGTGGAACAAGTCCGCCGTCGGCTCCTACTCGAGCTCGTCCTCCTCGTCCACAGCCCCTCCAGCCAGCACAGACACGCCCTCCCCCAAGGATTGCAACAGCGAAGGCGAGATCATCCGGGAAAGAAGCGGCGACGCGCCGCCCGCCAGCCTGCACGAGAGAACACAGAGCGGCCGCAGCCACAGCGAGAAGGAGAACAGGTTCAGGAACGGGCCCAGCGAGGAGCGGTCCGCGCCGCCGCCGCCGTCCAAGAAGCAGAGCCGGCACCGGCCGGACGGGAAGCCGCGCCCGCGCTCCTGGTCATCCGGCTCCAGCGAAGCCGGCTCGAGCTCCAGCGGGAACCAGGGGGAGCCCAAGGCGTCCGCGAAGTGCGTGAAGTTGAGGCACAAGGTGCGGGAGATCCGGAACAAGAAAGGAGCGCGCAGCGGGCAGAGCCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019427-'7-8,'7-5,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=1.000 C2=0.370
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(1.7=100),PF144001=Transglut_i_TM=FE(23.9=100)
A:
PF153761=DUF4603=FE(2.1=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
C2:
PF153761=DUF4603=FE(85.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTAGTGGAGGAGCTCTGCT
R:
CTGTGGACGAGGAGGACGAG
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]