RnoEX0048895 @ rn6
Exon Skipping
Gene
ENSRNOG00000027623 | LOC680039
Description
hypothetical protein LOC680039 [Source:RGD Symbol;Acc:1596848]
Coordinates
chr14:79306872-79318481:+
Coord C1 exon
chr14:79306872-79306938
Coord A exon
chr14:79307829-79307910
Coord C2 exon
chr14:79318373-79318481
Length
82 bp
Sequences
Splice sites
3' ss Seq
GAATTTTTGTCTTATAACAGAAG
3' ss Score
5.5
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
AGCTCTGGAATCGAGACTTTAGTAGAGGAGCTCTGCTGCAGACTGAAAGACCTACAGAGTGAGCAAG
Seq A exon
AAGAGAAGATTCACAAAAAGTTAGAGGGTTCTCCTTCTCCAGAGGCAGAATTGTCCCCTACAGCAAAGGATCAAGTGGAAAT
Seq C2 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAGAAGCAGAGCTGGTGGGAAAAGGCTTTGTACTCTCCCCTTTTTCCCACGTCAGAGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027623_MULTIEX1-4/8=3-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.857 C2=0.180
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(1.8=100),PF144001=Transglut_i_TM=FE(23.9=100)
A:
PF153761=DUF4603=FE(2.2=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
C2:
PF153761=DUF4603=PD(2.6=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGGAATCGAGACTTTAGT
R:
CTGACGTGGGAAAAAGGGGAG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]