GgaEX1031636 @ galGal3
Exon Skipping
Gene
ENSGALG00000015538 | KIAA0232
Description
NA
Coordinates
chr4:82807575-82813665:+
Coord C1 exon
chr4:82807575-82807641
Coord A exon
chr4:82808925-82809006
Coord C2 exon
chr4:82810368-82813665
Length
82 bp
Sequences
Splice sites
3' ss Seq
GGAATTTTCTTCCAAAACAGAGG
3' ss Score
3.81
5' ss Seq
AATGTATGC
5' ss Score
3.91
Exon sequences
Seq C1 exon
AGCTCTGGGATTGAAACTTTAGTGGAGGAGCTTTGCTCCAAACTGAAAGACCTTCAGAGTAAGCAAG
Seq A exon
AGGAGAAGATTCACAAAAAGTTAGAAGGCTCATTGTCTCCTGAGGCTGATTTATCTCCCACAGCAAAGGATCAAGTAGAAAT
Seq C2 exon
GTACTATGAAGCATTTCCTCCTCTATCTGAAAAGCCAGTTTGCCTGCAGGAAATTATGACTGTATGGAATAAATCCAAAGTATGCTCTTACTCTAGCTCCTCATCTTCATCCACTGCTCCACCAACTAGCACAGATACATCTTCTCCAAAGGACTGCAATAGTGAAAGTGAAGTAACTAAAGACAGAAGTAATAAAGTACCTGCCGCTGTACACGAAAGAACGCAGCAGAAGAAAAGTAAAAATGAGAAAGAAAACAAGTTTAGTAACAATGCTGTTGAAGATAAGCCTGTTTTGTATAAAAAACAAGTCCGACATAAGTCTGAGGGAAAGATGCGTCCTCGCTCCTGGTCATCTGGATCCAGTGAGGCTGGCTCAAGTTCTAGTGGTAATCAAGGTGAATACAAGGCGTCGATGAAATGCATTAAAGTAAGACACAAAACAAGAGAGGTTCGAAATAAAAAAGGGCGTAATGGGCAAAGCAGGCTTGCAGTGAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.786 C2=0.317
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(1.7=100),PF144001=Transglut_i_TM=FE(23.9=100)
A:
PF153761=DUF4603=FE(2.1=100),PF144001=Transglut_i_TM=PD(10.9=35.7)
C2:
PF153761=DUF4603=FE(85.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGCTCCAAACTGAAAGACC
R:
CTGTGCTAGTTGGTGGAGCAG
Band lengths:
172-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]