MmuEX6017300 @ mm9
Exon Skipping
Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36955895-36962379:-
Coord C1 exon
chr5:36962313-36962379
Coord A exon
chr5:36961392-36961473
Coord C2 exon
chr5:36955895-36959183
Length
82 bp
Sequences
Splice sites
3' ss Seq
GAATTTTTGTCTTATAACAGAAG
3' ss Score
5.5
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
AGCTCTGGGATCGAGACTTTAGTAGAAGAGCTCTGCTGCAGACTGAAAGACCTACAGAGCGAGCAAG
Seq A exon
AAGAGAAGATTCACAAAAAGTTAGAAGGTTCTCCTTCTCCAGAGGAAGAATTGTCCCCTACAGCAAAAGATCAAGTGGAAAT
Seq C2 exon
GTACTATGAAGCATTTCCACCACTGTCTGAGAAACCGGTTTGCCTGCAAGAGATCATGACCGTGTGGAACAAGTCCAAACCCTGTTCTTACTCTAGCTCCTCGTCATCATCCACAGTCCCACCAGCAAGCACGGATACATCTTCTCCAAAGGACTGCAACAGTGAGAGTGAAGCCGTCAGAGAGAGAAGCAGTGTCGCCTCTGTCCCCATGCATGAGAAAGCCCAGAGCAGGAGCAGACACGAGAAGGAGAGCAAGCTGAGCAGTAGCACCATCGAAGAAAAGCCTGCCTTTTACAAAAGGCAGATCCGACACAAACCTGAAGGGAAGACGCGCCCTCGCTCATGGTCATCTGGCTCTAGTGAAGCAGGTTCAAGTTCAAGTGGTAACCAAGGAGAGTTAAAAGCATCCATGAAGTATGTTAAAGTCAGACACAAGGCACGAGAAATTCGAAACAGAAAAGGGCGGAATGGGCAAAACAGGCATTCACTGAAGCATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.929 C2=0.317
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PU(1.9=95.7)
A:
PF153761=DUF4603=FE(2.1=100)
C2:
PF153761=DUF4603=FE(85.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCTCTGCTGCAGACTG
R:
ATGTATCCGTGCTTGCTGGTG
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: