DreEX0087153 @ danRer10
Exon Skipping
Gene
ENSDARG00000052244 | zgc:158564
Description
zgc:158564 [Source:ZFIN;Acc:ZDB-GENE-070112-1662]
Coordinates
chr7:39399159-39403110:+
Coord C1 exon
chr7:39399159-39399228
Coord A exon
chr7:39399327-39399414
Coord C2 exon
chr7:39399792-39403110
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTGCTACTATTGTCTTACAGAAA
3' ss Score
9.68
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
AATTCTGGAATTGAAAGCTTGGTTGAGGAACTTTGCTCTAAACTGAAAGATATTCAGAACAAACAGAAAG
Seq A exon
AAAAAGAAAAGCATGGAATTAAAAAATCTGATATCTCTCAGTCCCCTGAGCCAGATGAATCACTTTCTTCTAAGGATCAGGTTGAGAT
Seq C2 exon
GTACTATGAAGCTTTTCCACCCCTGTCAGAAAAACCTGTTTGTCTTCAGGAAATTATGACGGTGTGGAACACAGCTAAAGCCTGCACATATTCCAGCTCATCATCATCTGCTGTCCCTCAAACAAGCACAGACACATCCTCTCCAAAAGACTGCACCAGCGAGGGTGAAGCCTTTAAAGACCGAACAGTTGATGCACCCAGTTCCACCTCCACAACCAGCGAGAAGGCCCAGCAGCGACGCACTAAGAGGGAGAAGGAAAACAGATTCCATGGAAGCGCAACAGGAATGCCTGACGATCAGGTTGCTCCTCATAGCAAGAGGCAGGCCAGACACCGGTCAGAGGGGAGATTCCGTCCCCGATCATGGTCCTCTGGCTCCAGTGAGGCAGGCTCAAGCTCCAGTGGTAACCAGGGTGACCAGGCCCCTAGTTGCAAATCAGTCCGCATAAGACACAAGTCTCGTGAGGTCAGTGGCAGAAACAAAAAGGGCCGAAGTGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052244-'7-5,'7-4,8-5
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=1.000 C2=0.355
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(1.8=100)
A:
PF153761=DUF4603=FE(2.2=100)
C2:
PF153761=DUF4603=FE(85.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGGTTGAGGAACTTTGCT
R:
TGCTTGTTTGAGGGACAGCAG
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]