MmuEX6017300 @ mm10
Exon Skipping
Gene
ENSMUSG00000029190 | D5Ertd579e
Description
DNA segment, Chr 5, ERATO Doi 579, expressed [Source:MGI Symbol;Acc:MGI:1261849]
Coordinates
chr5:36613246-36619730:-
Coord C1 exon
chr5:36619664-36619730
Coord A exon
chr5:36618743-36618824
Coord C2 exon
chr5:36613246-36616534
Length
82 bp
Sequences
Splice sites
3' ss Seq
GAATTTTTGTCTTATAACAGAAG
3' ss Score
5.5
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
AGCTCTGGGATCGAGACTTTAGTAGAAGAGCTCTGCTGCAGACTGAAAGACCTACAGAGCGAGCAAG
Seq A exon
AAGAGAAGATTCACAAAAAGTTAGAAGGTTCTCCTTCTCCAGAGGAAGAATTGTCCCCTACAGCAAAAGATCAAGTGGAAAT
Seq C2 exon
GTACTATGAAGCATTTCCACCACTGTCTGAGAAACCGGTTTGCCTGCAAGAGATCATGACCGTGTGGAACAAGTCCAAACCCTGTTCTTACTCTAGCTCCTCGTCATCATCCACAGTCCCACCAGCAAGCACGGATACATCTTCTCCAAAGGACTGCAACAGTGAGAGTGAAGCCGTCAGAGAGAGAAGCAGTGTCGCCTCTGTCCCCATGCATGAGAAAGCCCAGAGCAGGAGCAGACACGAGAAGGAGAGCAAGCTGAGCAGTAGCACCATCGAAGAAAAGCCTGCCTTTTACAAAAGGCAGATCCGACACAAACCTGAAGGGAAGACGCGCCCTCGCTCATGGTCATCTGGCTCTAGTGAAGCAGGTTCAAGTTCAAGTGGTAACCAAGGAGAGTTAAAAGCATCCATGAAGTATGTTAAAGTCAGACACAAGGCACGAGAAATTCGAAACAGAAAAGGGCGGAATGGGCAAAACAGGCATTCACTGAAGCATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029190-'19-14,'19-13,20-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.893 C2=0.321
Domain overlap (PFAM):
C1:
PF153761=DUF4603=FE(1.7=100)
A:
PF153761=DUF4603=FE(2.1=100)
C2:
PF153761=DUF4603=PU(81.7=99.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCTCTGCTGCAGACTG
R:
ATGTATCCGTGCTTGCTGGTG
Band lengths:
183-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types