BtaEX6032859 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118212844-118276524:+
Coord C1 exon
chr6:118212844-118213578
Coord A exon
chr6:118247881-118248001
Coord C2 exon
chr6:118276406-118276524
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTTTCATTTTCTTCTTACAGGAA
3' ss Score
12.55
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGTAACCCGGAGCCTGTCCCCTGCAGCGTGGTCCACGTGAGGAGGAAGCCATCCGAGTCGGAGATCGTCCCTGAGCGAGCCTGCCAGAGTGCCTGCCTGCTGCCCTCCTACGCGCCCCCGGCTCCCGCCGGTGCCGAGCGGGAGCAGAGTGTGCGCAAGTCCTCCACGTTTCCCAGGACAGGCTACGACTCGGTGAAGCTCTACAGCCCCGCCTCCCAGACCCTGCAGCGCAGCGACAATGTCTCGGTGTGCAGCGTGTCCAGCCTCAGCACGGAGCTGTCCACCACGCTGTCTGTCAGCAACGAGGACATCTTGGACCTCGTGGTCACGAGCAGCTCCAGTGCCATCGTGACCCTGGAGAACGACGACGACCCGCAGTTCACCGACGTCACCTTGAGCTCCACCAGGGAGACCCGTGACCTCCAGCGGGACTGTGCTGGCGAGACGGAGGAGGGGAGGAAGCTGAGGCTCCTGGGGCCGTTCAGTCACTTCTTTACCAG
Seq A exon
GAATTCACTTGCTAGAAAACAGAATGCAAGACTTGACAAACAAAGTGACTTGGGATGGAAGTTATTTGGAAAAGTACCACTCGGAGAGAATGCTCAGAAAGATGCAAAGAAGTTACAAAAG
Seq C2 exon
GAATATGAAGACAAGGCTGGACGACCTAGCAAGCCTCCCTCTCCGAAGCAGAATGTGAGGAAGAATCTTGACTTTGAGCCTCTCTCCACCACCGCACTCATCCTGGAGGACAGGCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493-'0-4,'0-2,10-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.390 C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
PF085986=Sds3=PU(11.0=31.7)
C2:
PF085986=Sds3=PU(29.3=67.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGAGGACATCTTGGACC
R:
ACATTCTGCTTCGGAGAGGGA
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]