GgaEX0022805 @ galGal4
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
TBC1 domain family member 14 [Source:RefSeq peptide;Acc:NP_001239243]
Coordinates
chr4:79447806-79480237:+
Coord C1 exon
chr4:79447806-79448535
Coord A exon
chr4:79461633-79461753
Coord C2 exon
chr4:79480119-79480237
Length
121 bp
Sequences
Splice sites
3' ss Seq
GGTTTTTTCTTTTTTTGTAGGAA
3' ss Score
9.82
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGAAATCCAGAGCCCGTTCACTGCAATGTGCTAACTGCGAAGAGGAAGCAGTCAGAACCTGAAATTGTGCCTGACAGAACTTTTCAGAGCGCGTGTACACTGCCGTCCTATGTGCCTCCACGGCCTCTGACTTCTGAACACGATCACGCCGTGCGAAAATCCTCTACTTTTCCAAGGACTGGGTATGACACTGTCAAGCTTTACAGTCCGACTTCAAAAACACTGAATCGAAGTGATGATATCTCTGTCTGTAGTGTTTCTAGTCTTAGCACAGAACTGTCAACAACTTTATCAGTCAGCAACGAGGACATTTTGGACTTTGTGGTCACAAGCAGTTCGAGCGCAATTGTGACTCTGGAGACTGATGAAGCACACTTCTCAGATGTCACCCTGAGTTCCACTAAGGAGACCAATGAACAAAGTCAGCAGGACTGTTGTCAAGAGACAGAAGTGGACAGTAGACAGAAAATATTGGGACCTTTCACCAACTTCCTTGCCAG
Seq A exon
GAATTTGTTTACCAGGAAGCAAAATGCAAGATCTGAAAAACAAAATGATGTGGGCTGGAAGTTGTTTGGAAAAGTACCCCTCAGAGAAAACTCACAGAAAGATCCTAAAAAAATACAAAAG
Seq C2 exon
GAATATGAAGAAAAAACTGGACGAGCTCACAGACCACTCTCTCCTAAGCAGAATGTGAGGAAGAACCTTGATTTTGAGCCACTCTCCACTACTGCACTTATTTTAGAGGACAGACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546_MULTIEX1-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=0.311 C2=0.692
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF085986=Sds3=PU(34.4=82.5)
Main Skipping Isoform:
ENSGALT00000025058fB2839
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCAATTGTGACTCTGGAG
R:
GCAGTAGTGGAGAGTGGCTCA
Band lengths:
256-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]