HsaEX0063773 @ hg19
Exon Skipping
Gene
ENSG00000132405 | TBC1D14
Description
TBC1 domain family, member 14 [Source:HGNC Symbol;Acc:29246]
Coordinates
chr4:6925100-6996029:+
Coord C1 exon
chr4:6925100-6925838
Coord A exon
chr4:6969031-6969151
Coord C2 exon
chr4:6995911-6996029
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTGTTATTTTCTTCCTATAGGAA
3' ss Score
11.52
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
AACCCGGAGCCTGTACCCTGCAGCGCGGTCCACGTGAGGAGGAAGCAGTCCGACTCCGACCTCATCCCCGAGCGGGCCTTCCAGAGCGCCTGCGCGCTGCCATCCTGTGCGCCACCAGCTCCTAGCAGCACCGAGCGGGAACAGAGCGTGCGCAAATCCTCCACGTTTCCCAGGACAGGCTATGACTCGGTAAAGCTCTATAGCCCGACCTCCAAAGCCCTGACCCGCAGCGATGATGTCTCCGTCTGCAGCGTGTCCAGTCTTGGGACAGAGCTGTCCACCACGCTGTCCGTCAGCAATGAGGACATCTTGGACCTTGTGGTCACGAGCAGCTCCAGTGCCATTGTGACCCTGGAGAATGACGATGACCCACAGTTTACCAACGTCACCTTGAGCTCTATCAAGGAAACCCGTGGCTTACACCAGCAGGACTGTGTTCATGAAGCTGAGGAGGGGAGTAAATTGAAAATATTGGGGCCATTTAGTAACTTCTTTGCAAG
Seq A exon
GAACTTGCTTGCTAGAAAACAAAGTGCAAGGCTTGACAAACACAATGACTTGGGATGGAAGTTATTTGGGAAAGCGCCACTCCGAGAGAATGCCCAGAAGGATTCAAAGAGAATACAGAAG
Seq C2 exon
GAATATGAAGACAAGGCTGGAAGACCTAGCAAGCCACCCTCTCCAAAGCAGAATGTGAGGAAGAATCTTGACTTTGAACCACTTTCCACCACCGCACTCATCCTCGAGGACAGACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132405-'7-10,'7-7,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=0.366 C2=0.700
Domain overlap (PFAM):
C1:
PF041818=RPAP2_Rtr1=WD(100=34.0)
A:
NO
C2:
PF085986=Sds3=PU(28.4=62.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCGTCAGCAATGAGGAC
R:
TGCTAGGTCTTCCAGCCTTGT
Band lengths:
246-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)