DreEX0077406 @ danRer10
Exon Skipping
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39413904-39421976:+
Coord C1 exon
chr7:39413904-39414618
Coord A exon
chr7:39417226-39417352
Coord C2 exon
chr7:39421858-39421976
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTATTTTTCATAAGGGG
3' ss Score
6.28
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GAGATAAACCCACCTGAGCACATTCACGCTCGAGTCACCATTGCTGAGCTGGTGGTTCCACCTCCACATGATGATAATCCAGCAACATTAAACTTAGATATCTCGGATGGATCTTTACTCAAGTCTTCCACCTTCCCCCGTTGTGACTTTGATTTGGTACGTCACTATGGTCCAAGCGGGCTCTCAAGCGCTGCTGGCAAGGGTACTTTGAACCGTAGTGATGATATTTCGGTGTGCAGTGTGTCCAGTTTAAGTACTGAGTTTTCAACCACATTGTCAGTCAGTAATGAGGACTTCCTTGACTTCATGGTTACATCTGAGTCTAGCGCTGTTGTTACATTTGAGAATGAAGATGTCTTGCATCGGTTTGACAGTTCACTCTCTGCACCCATTGACCTGCATGGCAAGCTGAGCAGCCCCCAACGGCAGCCTGTGGGGGTCTCTGGAGCACATGAGGCTCGGCCTAAGAGATTGGGTCCACTCGCCAGTTTCTTCAACAG
Seq A exon
GGGTCTTTTTGCTAAGAGGATGAAGGACACTGGTGCACTAGAAGGGCAGAGAGAGCCTGGGTGGAAGCTGTTTGGTAAAGTTCCACATAAAGATCTTCCAACCAAAGACTCCAGGAAACTACAAAAG
Seq C2 exon
GAATATGAAAGAAGGAGTGGACACACAAGCAATTCCACATCTCCCAAAAAGAATGTAAGAAAGAACCTGGACTTTGAGCCTCTATCAACCACAGCCCTTATACTTGAGAATCGTCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520-'2-9,'2-5,4-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.485 A=0.721 C2=0.725
Domain overlap (PFAM):
C1:
NO
A:
PF085986=Sds3=PU(3.1=14.0)
C2:
PF085986=Sds3=FE(20.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTGCATCGGTTTGACAGT
R:
GGCTGTGGTTGATAGAGGCTC
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]