GgaEX0022805 @ galGal3
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82840366-82873526:+
Coord C1 exon
chr4:82840366-82841015
Coord A exon
chr4:82854113-82854233
Coord C2 exon
chr4:82873408-82873526
Length
121 bp
Sequences
Splice sites
3' ss Seq
GGTTTTTTCTTTTTTTGTAGGAA
3' ss Score
9.82
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGAAATCCAGAGCCCGTTCACTGCAATGTGCTAACTGCGAAGAGGAAGCAGTCAGAACCTGAAATTGTGCCTGACAGAACTTTTCAGAGCGCGTGTACACTGCCGTCCTATGTGCCTCCACGGCCTCTGACTTCTGAACACGATCACGCCGTGCGAAAATCCTCTACTTTTCCAAGGACTGGGTATGACACTGTCAAGCTTTACAGTCCGACTTCAAAAACACTGAATCGAAGTGATGATATCTCTGTCTGTAGTGTTTCTAGTCTTAGCACAGAACTGTCAACAACTTTATCAGTCAGCAACGAGGACATTTTGGACTTTGTGGTCACAAGCAGTTCGAGCGCAATTGTGACTCTGGAGACTGATGAAGCACACTTCTCAGATGTCACCCTGAGTTCCACTAAGGAGACCAATGAACAAAGTCAGCAGGACTGTTGTCAAGAGACAGAAGTGGACAGTAGACAGAAAATATTGGGACCTTTCACCAACTTCCTTGCCAG
Seq A exon
GAATTTGTTTACCAGGAAGCAAAATGCAAGATCTGAAAAACAAAATGATGTGGGCTGGAAGTTGTTTGGAAAAGTACCCCTCAGAGAAAACTCACAGAAAGATCCTAAAAAAATACAAAAG
Seq C2 exon
GAATATGAAGAAAAAACTGGACGAGCTCACAGACCACTCTCTCCTAAGCAGAATGTGAGGAAGAACCTTGATTTTGAGCCACTCTCCACTACTGCACTTATTTTAGAGGACAGACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-'0-12,'0-2,2-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.498 A=0.317 C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF085986=Sds3=PU(34.4=82.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGCAATTGTGACTCTGGAG
R:
GCAGTAGTGGAGAGTGGCTCA
Band lengths:
256-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]