BtaEX6034646 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003341 | DOK2
Description
Bos taurus docking protein 2, 56kDa (DOK2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102002]
Coordinates
chr8:69727564-69729317:-
Coord C1 exon
chr8:69729163-69729317
Coord A exon
chr8:69727890-69728171
Coord C2 exon
chr8:69727564-69727651
Length
282 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCCATCTGGGGCCAGAAA
3' ss Score
4.01
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAGAGAAGGGGGAACCTAGGGCAGAGAGGAGCGAGAGCGGGTGGGTGTGGAAGGGGAGAGCTGGCGCTCAGGGGCCCCGGGATGCTGCGAGGATGGAGGACGTGGTGGTGAAGCAGGGCTTCCTGTACCTCCAGCAGCAGCAGACTTTTGGGAAG
Seq A exon
AAATGGCGCCGGTTCGGGGCTGCACTGTATGGAGGTTCAGGCTGTGCACTGGCCCGGTTGGAGCTCCAGGAGGGCTCCGAGAAGTCGCGCCGGGGAGAGGCCCCCCGGAGAGTGATCCGCCTCAATGACTGCCTGCGGGTGTCCGAAGCCAGCGGGGAGGCCAGCAGTCCCCGAGACACCAGCACCTTCTTCCTGGAGACCACGGAACGCCTGTACCTGCTGGCAGCCCCCACCGCTGAGCGTGGCGACTGGATACAGGCCATCTGCCTCCTGGCCTTCCCC
Seq C2 exon
GGTCGGCGGAAGGAGCTGTCAGGGCTGGAGGGGAAGGGTGGCCGGCCCCGCATGGAGGAAAATGAATTGTACAGCAGCACGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003341-'0-3,'0-2,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.149 C2=0.733
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(14.7=76.2)
A:
PF0016924=PH=PD(83.5=96.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTAGGGCAGAGAGGAG
R:
AGTCGTGCTGCTGTACAATTCA
Band lengths:
229-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]