GgaEX1020765 @ galGal4
Exon Skipping
Gene
ENSGALG00000026250 | DOK2
Description
docking protein 2, 56kDa [Source:HGNC Symbol;Acc:HGNC:2991]
Coordinates
chr22:1376680-1379556:+
Coord C1 exon
chr22:1376680-1376760
Coord A exon
chr22:1378151-1378432
Coord C2 exon
chr22:1379457-1379556
Length
282 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTCATGCCACGTCAGAAA
3' ss Score
0.69
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
GATGCTCTGGGCTGCAGGATGGAGGAGGTGGTGGTGAAGCAGGGCGTGCTGCACCTGCAGCTGCAGCAGACCTTCGGCAAG
Seq A exon
AAATGGAAGAAGTATTGGGGCGTTCTGTACCGGGAATCCTCCTGCTCCACCGCCCGCCTGGAGCTCTTCGAAAGCGCCGACAAACCGCGGAAGGGCGAGAGCAGCCGACGCCTGGTGAGGCTGAGCGACTGCGTGCACGTGGCCGAGGTGGGTGGGGAGGCGGGCTGCCCCCGCGCCACGGCCCCCTTCCTGCTGGAGACCACCGAGAAGCGGTACCTGCTGGCAGCAGAGGGCGGCGAGGTGGAGGAATGGGTGAGGAGGCTGTGCCAGCTGGCGTTCCCG
Seq C2 exon
AGGAGCCAGGAGGAGCAGGCGGTGGGGAAGGACAGACAGCTGAGCTCCGACGGCGAGTTCTCCATGGCTGAAAACTCCCTGTACAGCTCCCGGGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026250-'0-1,'0-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.176
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(19.0=95.7)
A:
PF0016924=PH=PD(79.3=97.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTCTGGGCTGCAGGAT
R:
CTTTGCCCCGGGAGCTGTA
Band lengths:
181-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]