MmuEX0015488 @ mm9
Exon Skipping
Gene
ENSMUSG00000022102 | Dok2
Description
docking protein 2 [Source:MGI Symbol;Acc:MGI:1332623]
Coordinates
chr14:71174111-71175819:+
Coord C1 exon
chr14:71174111-71174316
Coord A exon
chr14:71175273-71175554
Coord C2 exon
chr14:71175791-71175819
Length
282 bp
Sequences
Splice sites
3' ss Seq
CGTGGCATACCTGGGCTCAGAAG
3' ss Score
1.48
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTCGTCATCAAGCAGACTAGAATAGTGTAGAAAAACTCTAGTCAGAGAGGAAATGAACTAGAGAGAAGGGGGAACAGGCCCAGAAGAGAGAAGAGAGAGGGCAGAGGCAATGGCAGTGGGGAGCTGAAGCTGCGATGGTCAGGATGGAGGAGCCAGCTGTGAAGCAGGGCTTCCTGCATCTTCAGCAGCAGCAGACCTTTGGCAAG
Seq A exon
AAGTGGCGCCGGTTCGCAGCCGTGTTATATGGAGAGTCTGGCTGTGCCCTAGCCAGACTAGAGCTCCAGGATGTCCCCGAGAAGACACGGCGAGGAGAGGCCACTCGGAAGGTTGTCCGCCTCAGTGACTGCTTACGGGTAGCAGAGGTAGGCAGTGAGGCCAGCAGCCCCCGGGACACCAGTGCCTTCATCCTGGAGACCAAGGAGCGCCTGTACCTACTGGCAGCCCCCTCGGCAGAGCGCAGTGACTGGATACAGGCCATCTGCCTGTTGGCTTTCCCG
Seq C2 exon
GGACAGAGGAAAGGGTCACCAGGACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022102-'7-13,'7-10,8-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.032 C2=0.433
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(14.7=66.7)
A:
PF0016924=PH=PD(83.5=96.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTCATCAAGCAGACTAGA
R:
TCCTGGTGACCCTTTCCTCTG
Band lengths:
230-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: