HsaEX0020683 @ hg38
Exon Skipping
Gene
ENSG00000147443 | DOK2
Description
docking protein 2 [Source:HGNC Symbol;Acc:HGNC:2991]
Coordinates
chr8:21911901-21913860:-
Coord C1 exon
chr8:21913539-21913860
Coord A exon
chr8:21912229-21912312
Coord C2 exon
chr8:21911901-21911988
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCAGTGCCTTCTTCCTGGAGACC
3' ss Score
-2.79
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTAACTCACTGGAAATGCAGGAAGCTTGAGTATAAAACTCACTCAGAAAAAAAAAAAAAAAAGAAAAAAAAGAACACACACTCAGAAGAAACCGCAGGGCCTATCAGCCTGTCGTCATCGAGCAGACTAGAATAGTATAGAAAACCCTAGGCAGAGAGGAAATGAACTTCAGAGAAGGGAAACACACGGCTAAGAAGAGAGAGGCAAGGGCAGGAGTGAAGGAGAGAGCTGAAGCCTGGGGCTCCGAGATGGTCAGAGGATGGGAGACGGGGCAGTGAAACAAGGCTTCTTGTATCTTCAGCAGCAGCAGACGTTTGGAAAG
Seq A exon
ACCAAGGAGCGCCTGTACCTCCTGGCGGCCCCTGCAGCGGAGCGCGGCGACTGGGTGCAGGCCATCTGCCTCCTGGCCTTCCCC
Seq C2 exon
GGGCAGAGGAAGGAGCTCTCGGGGCCAGAGGGAAAGCAGAGCCGGCCCTGCATGGAGGAAAATGAATTGTACAGCAGCGCAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147443-'0-6,'0-5,1-6
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.450
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(14.7=76.2)
A:
PF0016924=PH=PD(83.5=96.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGCAGGAGTGAAGGAGAG
R:
TCATTTTCCTCCATGCAGGGC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development