RnoEX6052400 @ rn6
Exon Skipping
Gene
ENSRNOG00000013922 | Dok2
Description
docking protein 2 [Source:RGD Symbol;Acc:1310966]
Coordinates
chr15:52451161-52452955:+
Coord C1 exon
chr15:52451161-52451380
Coord A exon
chr15:52452354-52452635
Coord C2 exon
chr15:52452868-52452955
Length
282 bp
Sequences
Splice sites
3' ss Seq
CTTGCCATACTTGGGCTCAGAAG
3' ss Score
2.52
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
ACCACAGGGCCTATCACCCTGTCGTCATCAAGCAGACTAGAATAGAGTAGAAAAACTCTAGGCAGAGAGGAAATGAACTAGAGAGAAGGGGGAACAGGCCCAGAAGAGAGAGGAGAGAGGGCAGAAGCAATGGCGGGCTGAGGCTGGGATGGTCAGGATGGGGGAGATGGCCGTGAAGCAAGGCCTCCTGCATCTCCAGCAGCAGCAGACCTTTGGCAAG
Seq A exon
AAGTGGCGCCGGTTCACAGCCGTGTTATATGGAGAGTCTGGCTGTGCCCTAGCCAGACTAGAGCTCCAGGATGGCCCGGAGAAGACACGTCGAGGAGAGGCCACTCGGAAGGTTGTTCGCCTCAGTGACTGCTTACGGGTAGCAGAGGTAGGCAGTGAGGCCAGCAGTCCCCGGGACACCAGTGCCTTCATCCTGGAGACCAAGGAGCGTCTGTACCTGCTGGCAGCCCCCTCAACAGAGCGCAGTGATTGGATACAGGCCATCTGCCTGTTGGCTTTCCCG
Seq C2 exon
GGGCAGAGGAAAGAGTCACCAGGTCTGGAGGAAAAGAATGGCAGTCCCTGCATGGAGGAGAATGAGTTGTATAGCAGCTCTACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013922-'1-9,'1-4,3-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.533
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(14.7=66.7)
A:
PF0016924=PH=PD(83.5=96.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTATCACCCTGTCGTCAT
R:
AGCTGCTATACAACTCATTCTCCT
Band lengths:
292-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]