BtaEX6034647 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003341 | DOK2
Description
Bos taurus docking protein 2, 56kDa (DOK2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102002]
Coordinates
chr8:69726299-69728171:-
Coord C1 exon
chr8:69727890-69728171
Coord A exon
chr8:69727564-69727651
Coord C2 exon
chr8:69726299-69726483
Length
88 bp
Sequences
Splice sites
3' ss Seq
ACGTTGGGCCTTCTCCCCAGGGT
3' ss Score
8.78
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAATGGCGCCGGTTCGGGGCTGCACTGTATGGAGGTTCAGGCTGTGCACTGGCCCGGTTGGAGCTCCAGGAGGGCTCCGAGAAGTCGCGCCGGGGAGAGGCCCCCCGGAGAGTGATCCGCCTCAATGACTGCCTGCGGGTGTCCGAAGCCAGCGGGGAGGCCAGCAGTCCCCGAGACACCAGCACCTTCTTCCTGGAGACCACGGAACGCCTGTACCTGCTGGCAGCCCCCACCGCTGAGCGTGGCGACTGGATACAGGCCATCTGCCTCCTGGCCTTCCCC
Seq A exon
GGTCGGCGGAAGGAGCTGTCAGGGCTGGAGGGGAAGGGTGGCCGGCCCCGCATGGAGGAAAATGAATTGTACAGCAGCACGACTGCAG
Seq C2 exon
GGACTCCCCAAAAGGAGTTTGCTGTGACCGTGAGACCCACAGAAGTCAGTGAGAGGTGCCGGCTCCGGGGATCCTACACCCTCCGGGTTGGGGAGAGTGCCCTGGAGTTGTGGGGCGGCCCTGAGTCGGGCACCCAGCTATATGAATGGCCTTACAGGTTCCTGCGACGCTTTGGGCGGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003341-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.733 C2=0.097
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(83.5=96.8)
A:
NO
C2:
PF0217412=IRS=PU(58.4=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACCAGCACCTTCTTCCT
R:
GGCACCTCTCACTGACTTCTG
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]