DreEX6051166 @ danRer10
Exon Skipping
Gene
ENSDARG00000075818 | dok2
Description
docking protein 2 [Source:ZFIN;Acc:ZDB-GENE-080721-4]
Coordinates
chr8:42545765-42573658:-
Coord C1 exon
chr8:42573527-42573658
Coord A exon
chr8:42565305-42565407
Coord C2 exon
chr8:42545765-42545940
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGTATTTGTGTTTGTTATAGATG
3' ss Score
9.36
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
AAATGGCGAAAGGTCTGGTCTGTGTTGTATCGAGAAAGCTCCTGCTCTATCTCTCGCCTTGAGTTTTTCGAGATTAAAGATGGAACCCCTAACACGCTGGAGAAAGCAAACCGCAAACATGAAAACAAAAAG
Seq A exon
ATGAACTGGCCAGAGAAAGGTACGATGAGAGGAAACAGTTTACATAGTGAACCTGATGATGCCACGATGGCAGACAACACATTGTACTGCAGCAGAGAAACAA
Seq C2 exon
CAATGAAAGACTTTAAGGTGACAGTGAGGCGATCGGAGGCTTCTGAGAGATGCAGTCTGAAGGGAGTAGTACTTTTACGGACTGATACTGATAGCCTTCTTCTCAAAGACCCGAAGACAGGAGAGGTCCTGTACTCCTGGCCCTACCGTTTCCTCCGCAGGTTCGGACGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075818-'1-5,'1-3,3-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=0.457 C2=0.000
Domain overlap (PFAM):
C1:
PF154131=PH_11=FE(34.4=100)
A:
PF154131=PH_11=FE(26.6=100)
C2:
PF154131=PH_11=PD(28.1=60.0),PF0217412=IRS=PU(86.6=96.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAAGGTCTGGTCTGTGTT
R:
CCTCTCCTGTCTTCGGGTCTT
Band lengths:
253-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]